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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10023503m | ||||||||
Common Name | EUTSA_v10023503mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GeBP | ||||||||
Protein Properties | Length: 403aa MW: 43866 Da PI: 4.9946 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 123.1 | 1.3e-38 | 172 | 260 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +fqrlw+eeDei++LqG+idfka+tgksp++d++ y+f+kksisf+vsk+q+++Kir+LKkK+ k k+ +f+k+hdqk+f+l++ i Thhalv10023503m 172 AFQRLWTEEDEITVLQGMIDFKADTGKSPYEDTNLYYDFIKKSISFDVSKNQFMDKIRSLKKKYMSKGKT-------AFTKPHDQKSFKLCQNI 258 69***************************************************************99998.......9**************** PP DUF573 96 Wg 97 Wg Thhalv10023503m 259 WG 260 *9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.4E-31 | 173 | 260 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MSKKLNPLED PPTASSSDEE EVETSAGEEE EEDDSSSEEE DEPLASVIKP PSAAAVTIAV 60 PGKTTVPSAA KEASDSDAGS ETETDSDSET EQPSNPQGSG KSAAVTVAAS AATKPKKKEE 120 AQPSVILASP AAKAGAKRPS EGNSKEANSK RAKKVTSGDD EKKIGEDSKK PAFQRLWTEE 180 DEITVLQGMI DFKADTGKSP YEDTNLYYDF IKKSISFDVS KNQFMDKIRS LKKKYMSKGK 240 TAFTKPHDQK SFKLCQNIWG PEGMALESAV KSNGVSKKSQ KTKKLDSVKQ ELSFASSPNG 300 KAVEEDKRVL AYGGDLELPV AVKKPDWFEN SFLARSIASF GVDEYSVKQR WSLVPVENKK 360 KVEEKLKMLQ AKEIEFVLEK TQFLHEVTSM IAEASKNKTL DI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254577 | 7e-60 | AC254577.1 Capsella rubella clone JGIBSIA-13B13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391972.1 | 0.0 | hypothetical protein EUTSA_v10023503mg | ||||
TrEMBL | V4KPG5 | 0.0 | V4KPG5_EUTSA; Uncharacterized protein | ||||
STRING | Bra027078.1-P | 1e-139 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 4e-97 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10023503m |
Entrez Gene | 18010193 |